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Program Functions
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helpMenuHelp
The file vFbHelp.html contains help information for users of mrFindBorders. By starting help-
MenuHelp from the Help menu, a html file is displayed in a browser.
helpMenuAbout
The file vFbAbout.html is displayed in a browser.
helpMenuThesis
This document, the master’s thesis, can also be accessed. It is stored in pdf format and shown
when calling helpMenuThesis from the Help menu of mrFindBorders.
6.10 Model
The Model directory contains files that deal with the atlas images, e.g., the creation and dis-
playing of atlases.
vMkAtlasAtStart.m
This function is indirectly called when the user presses the button “1. Create Atlases”. It asks
the user for information so that it is possible to calculate the parameters needed to call
vMkAtlases, which actually creates the atlases. As mentioned before, the user can specify
points in fovea and boundaries, or he/she can draw a polygon. For the former case, vMkAtla-
sAtStart checks if there is already a point specified in the fovea. If not, the user is asked to
specify a point within the fovea. Then, the user has to choose between two options. The first
option is to create the atlas based on two points specified in the outer boundaries of V3, i.e.,
one point in the outer boundary of V3d and another point in the outer boundary of V3v. If the
user chooses the other option, points within the boundaries of V1 are needed. According to the
user’s selection, the function checks if the required points are already available. The user is
asked to specify the points if this is not the case. Once all needed points are given, the func-
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